What it is
Designing enzymes for reactions that proceed through several chemical steps has been an outstanding challenge. Using RFdiffusion together with an ensemble method that checks active-site preorganization at each step of the reaction, the team designed serine hydrolases from minimal active-site descriptions. The best designs reached catalytic efficiencies of up to 2.2 x 10^5 per molar per second, and crystal structures matched the computational models to within one angstrom.
Why it matters
This is the first de novo design of enzymes that carry out a genuine multistep mechanism, complete with a Ser-His-Asp catalytic triad and oxyanion hole. The catalysts were built on five distinct folds unlike those of any natural serine hydrolase, showing the approach is not copying nature but generating new solutions. It offers a roadmap for building enzymes for transformations that have no natural template.
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Filed underprotein design, enzyme design, RFdiffusion, generative AI, biochemistry